PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013590576.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family SRS
Protein Properties Length: 332aa    MW: 36840.6 Da    PI: 7.8292
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013590576.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702223.73.6e-691032682154
          DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel..........kskkqsal 86 
                     r+g+++CqdCGnqakkdC h+RCRtCCksrgf+C thvkstWvpa krrer +qla++++++a s++++++kr re           +s ++ ++
  XP_013590576.1 103 RQGSMNCQDCGNQAKKDCPHMRCRTCCKSRGFHCRTHVKSTWVPAVKRRERLAQLASLQHRSAFSRETQKAKRLREAngggdnvdkdHSGSAGSA 197
                     7899***********************************************************99999999999988899999887767778889 PP

          DUF702  87 sstklssaeskkeletss.lPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGlee 154
                      +t++++a+s++ +e+s+ lP+evss+avfrcvrvss+++  +++e+aYqtav+igGh+fkGiLydqG+e+
  XP_013590576.1 198 IATRVPNANSNSGFEVSQnLPPEVSSPAVFRCVRVSSMEEdeDDQEYAYQTAVNIGGHIFKGILYDQGPEQ 268
                     99************99877*******************88535567***********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.7E-62106267IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016237.7E-27108150IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.0E-25217266IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MAGFFYLGGR DNNKQDLHQV DKSSYLYLYK DEIYNTNKGF EIWPPQYFQE QHQQQHVTAP  60
ANFYSFGMVP SGSSSNNNNN NRSRSLHFNV VSDHEPGGFT VTRQGSMNCQ DCGNQAKKDC  120
PHMRCRTCCK SRGFHCRTHV KSTWVPAVKR RERLAQLASL QHRSAFSRET QKAKRLREAN  180
GGGDNVDKDH SGSAGSAIAT RVPNANSNSG FEVSQNLPPE VSSPAVFRCV RVSSMEEDED  240
DQEYAYQTAV NIGGHIFKGI LYDQGPEQDH HHQLNLLAPT ATTTNAEETA AKTAVTVAGN  300
NNTGLILDPS SLYPVQLSSY ISGTPFFTPP RS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2052670.0GU205267.1 Brassica rapa subsp. pekinensis short internode related sequence 5 (SRS5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590576.10.0PREDICTED: protein SHI RELATED SEQUENCE 5-like
SwissprotQ9LQZ50.0SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBLA0A0D3CWG30.0A0A0D3CWG3_BRAOL; Uncharacterized protein
STRINGBra003749.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26452572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.11e-165SHI-related sequence 5